registry/internal/database/migrations/008_clean_invalid_data.sql
Radoslav Dimitrov d9099e9117
Fix migration numbering and add migration 010 for package format (#675)
<!-- Provide a brief summary of your changes -->

## Motivation and Context
<!-- Why is this change needed? What problem does it solve? -->
The following PR fixes an issue we introduced on September, 30th that
caused some of the migrations to not apply. This PR fixes it. After
merging we'll have to reset staging as this would not work there (this
is expected).

## How Has This Been Tested?
<!-- Have you tested this in a real application? Which scenarios were
tested? -->

## Breaking Changes
<!-- Will users need to update their code or configurations? -->

## Types of changes
<!-- What types of changes does your code introduce? Put an `x` in all
the boxes that apply: -->
- [x] Bug fix (non-breaking change which fixes an issue)
- [ ] New feature (non-breaking change which adds functionality)
- [ ] Breaking change (fix or feature that would cause existing
functionality to change)
- [ ] Documentation update

## Checklist
<!-- Go over all the following points, and put an `x` in all the boxes
that apply. -->
- [ ] I have read the [MCP
Documentation](https://modelcontextprotocol.io)
- [ ] My code follows the repository's style guidelines
- [ ] New and existing tests pass locally
- [ ] I have added appropriate error handling
- [ ] I have added or updated documentation as needed

## Additional context
<!-- Add any other context, implementation notes, or design decisions
-->

Signed-off-by: Radoslav Dimitrov <radoslav@stacklok.com>
2025-10-15 17:00:39 +03:00

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PL/PgSQL

-- Migration 007a: Clean up invalid data before applying stricter constraints in migration 008
-- This migration removes or fixes data that would violate constraints introduced in the next migration
BEGIN;
-- Safety check: Count exactly what we'll be modifying
DO $$
DECLARE
invalid_name_count INTEGER;
empty_version_count INTEGER;
invalid_status_count INTEGER;
duplicate_count INTEGER;
total_to_delete INTEGER;
total_servers INTEGER;
has_known_bad_server BOOLEAN;
r RECORD;
BEGIN
-- Get total server count
SELECT COUNT(*) INTO total_servers FROM servers;
-- Check if we have the specific known problematic server from production
-- This server only exists in production data, not in test fixtures
SELECT EXISTS(
SELECT 1 FROM servers
WHERE value->>'name' = 'io.github.joelverhagen/Knapcode.SampleMcpServer/aot'
) INTO has_known_bad_server;
-- Skip migration if we don't have the known bad data (indicates test environment)
IF NOT has_known_bad_server THEN
RAISE NOTICE 'Migration 007a: Skipping cleanup - no known problematic data found (likely test/dev environment)';
RETURN; -- Exit early, don't run any cleanup
END IF;
RAISE NOTICE 'Migration 007a: Found known problematic data, proceeding with cleanup';
-- Count servers with invalid name format
SELECT COUNT(*) INTO invalid_name_count
FROM servers
WHERE value->>'name' NOT SIMILAR TO '[a-zA-Z0-9][a-zA-Z0-9.-]*[a-zA-Z0-9]/[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]';
-- Count servers with empty or NULL versions
SELECT COUNT(*) INTO empty_version_count
FROM servers
WHERE value->>'version' IS NULL OR value->>'version' = '';
-- Count servers with invalid status
SELECT COUNT(*) INTO invalid_status_count
FROM servers
WHERE value->>'status' IS NOT NULL
AND value->>'status' != ''
AND value->>'status' NOT IN ('active', 'deprecated', 'deleted');
-- Count duplicate name+version combinations
SELECT COUNT(*) INTO duplicate_count
FROM (
SELECT value->>'name', value->>'version', COUNT(*) as cnt
FROM servers
GROUP BY value->>'name', value->>'version'
HAVING COUNT(*) > 1
) dups;
-- Calculate total deletions (some servers might have both invalid name AND empty version)
SELECT COUNT(*) INTO total_to_delete
FROM servers
WHERE value->>'name' NOT SIMILAR TO '[a-zA-Z0-9][a-zA-Z0-9.-]*[a-zA-Z0-9]/[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]'
OR value->>'version' IS NULL
OR value->>'version' = '';
-- Log the cleanup operations with safety check
RAISE NOTICE 'Migration 007a Data Cleanup Plan:';
RAISE NOTICE ' Total servers in database: %', total_servers;
IF total_servers > 0 THEN
RAISE NOTICE ' Servers to DELETE: % (% percent of total)', total_to_delete, ROUND((total_to_delete::numeric / total_servers * 100), 2);
ELSE
RAISE NOTICE ' Servers to DELETE: %', total_to_delete;
END IF;
RAISE NOTICE ' - Invalid names: %', invalid_name_count;
RAISE NOTICE ' - Empty versions: %', empty_version_count;
RAISE NOTICE ' Servers to UPDATE (fix status): %', invalid_status_count;
RAISE NOTICE ' Duplicate name+version pairs: %', duplicate_count;
-- Always log the specific servers that will be deleted for transparency
IF total_to_delete > 0 THEN
RAISE NOTICE '';
RAISE NOTICE 'Servers that will be deleted:';
FOR r IN
SELECT value->>'name' as name, value->>'version' as version,
CASE
WHEN value->>'name' NOT SIMILAR TO '[a-zA-Z0-9][a-zA-Z0-9.-]*[a-zA-Z0-9]/[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]' THEN 'Invalid name format'
WHEN value->>'version' IS NULL THEN 'NULL version'
WHEN value->>'version' = '' THEN 'Empty version'
END as reason
FROM servers
WHERE value->>'name' NOT SIMILAR TO '[a-zA-Z0-9][a-zA-Z0-9.-]*[a-zA-Z0-9]/[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]'
OR value->>'version' IS NULL
OR value->>'version' = ''
ORDER BY value->>'name'
LOOP
RAISE NOTICE ' - % @ % (reason: %)', r.name, COALESCE(r.version, '<NULL>'), r.reason;
END LOOP;
END IF;
-- Always log the specific servers that will have status updated for transparency
IF invalid_status_count > 0 THEN
RAISE NOTICE '';
RAISE NOTICE 'Servers that will have status updated:';
FOR r IN
SELECT value->>'name' as name, value->>'version' as version, value->>'status' as status
FROM servers
WHERE value->>'status' IS NOT NULL
AND value->>'status' != ''
AND value->>'status' NOT IN ('active', 'deprecated', 'deleted')
ORDER BY value->>'name'
LOOP
RAISE NOTICE ' - % @ % (current status: %)', r.name, r.version, r.status;
END LOOP;
END IF;
-- SAFETY CHECK: Ensure we're deleting exactly the expected data
-- We only reach this point if we found the known bad server
-- In production (2025-09-30), we expect exactly 5 deletions and 1 status update
IF total_to_delete != 5 THEN
RAISE EXCEPTION 'Safety check failed: Expected to delete exactly 5 servers but would delete %. Check the log above for details. Aborting to prevent data loss.', total_to_delete;
END IF;
IF invalid_status_count != 1 THEN
RAISE EXCEPTION 'Safety check failed: Expected to update exactly 1 server status but would update %. Check the log above for details. Aborting to prevent data corruption.', invalid_status_count;
END IF;
END $$;
-- Delete servers with invalid names or empty versions
-- These cannot be reasonably fixed and would violate primary key constraints
DELETE FROM servers
WHERE value->>'name' NOT SIMILAR TO '[a-zA-Z0-9][a-zA-Z0-9.-]*[a-zA-Z0-9]/[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]'
OR value->>'version' IS NULL
OR value->>'version' = '';
-- Fix invalid status values by setting them to 'active'
-- These can be reasonably defaulted to a valid value
UPDATE servers
SET value = jsonb_set(value, '{status}', '"active"')
WHERE value->>'status' IS NOT NULL
AND value->>'status' != ''
AND value->>'status' NOT IN ('active', 'deprecated', 'deleted');
-- Remove duplicate name+version combinations
-- Keep the one with the most recent publishedAt date
DELETE FROM servers s1
WHERE EXISTS (
SELECT 1 FROM servers s2
WHERE s2.value->>'name' = s1.value->>'name'
AND s2.value->>'version' = s1.value->>'version'
AND (s2.value->>'publishedAt')::timestamp > (s1.value->>'publishedAt')::timestamp
);
-- Verify the operations completed as expected
DO $$
DECLARE
remaining_count INTEGER;
actual_deleted INTEGER;
actual_updated INTEGER;
still_invalid_names INTEGER;
still_empty_versions INTEGER;
still_invalid_status INTEGER;
BEGIN
SELECT COUNT(*) INTO remaining_count FROM servers;
-- Check if any invalid data remains
SELECT COUNT(*) INTO still_invalid_names
FROM servers
WHERE value->>'name' NOT SIMILAR TO '[a-zA-Z0-9][a-zA-Z0-9.-]*[a-zA-Z0-9]/[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]';
SELECT COUNT(*) INTO still_empty_versions
FROM servers
WHERE value->>'version' IS NULL OR value->>'version' = '';
SELECT COUNT(*) INTO still_invalid_status
FROM servers
WHERE value->>'status' IS NOT NULL
AND value->>'status' != ''
AND value->>'status' NOT IN ('active', 'deprecated', 'deleted');
RAISE NOTICE 'Data cleanup complete:';
RAISE NOTICE ' Servers remaining: %', remaining_count;
RAISE NOTICE ' Invalid names remaining: %', still_invalid_names;
RAISE NOTICE ' Empty versions remaining: %', still_empty_versions;
RAISE NOTICE ' Invalid status remaining: %', still_invalid_status;
-- Final safety check: Ensure we cleaned everything we intended to
IF still_invalid_names > 0 OR still_empty_versions > 0 OR still_invalid_status > 0 THEN
RAISE EXCEPTION 'Cleanup incomplete! Invalid data still remains. Aborting.';
END IF;
END $$;
COMMIT;