Merge branch 'main' into add-tasks-support

package-lock.json

@@ -1688,9 +1688,10 @@
       }
     },
     "node_modules/diff": {
-      "version": "5.2.0",
+      "version": "8.0.3",
-      "resolved": "https://registry.npmjs.org/diff/-/diff-5.2.0.tgz",
+      "resolved": "https://registry.npmjs.org/diff/-/diff-8.0.3.tgz",
-      "integrity": "sha512-uIFDxqpRZGZ6ThOk84hEfqWoHx2devRFvpTZcTHur85vImfaxUbTW9Ryh4CpCuDnToOP1CEtXKIgytHBPVff5A==",
+      "integrity": "sha512-qejHi7bcSD4hQAZE0tNAawRK1ZtafHDmMTMkrrIGgSLl7hTnQHmKCeB45xAcbfTqK2zowkM3j3bHt/4b/ARbYQ==",
+      "license": "BSD-3-Clause",
       "engines": {
         "node": ">=0.3.1"
       }
@@ -3804,7 +3805,7 @@
       "license": "MIT",
       "dependencies": {
         "@modelcontextprotocol/sdk": "^1.25.2",
-        "diff": "^5.1.0",
+        "diff": "^8.0.3",
         "glob": "^10.5.0",
         "minimatch": "^10.0.1",
         "zod-to-json-schema": "^3.23.5"

src/everything/server/roots.ts

@@ -30,7 +30,7 @@ export const roots: Map<string | undefined, Root[]> = new Map<
  */
 export const syncRoots = async (server: McpServer, sessionId?: string) => {
   const clientCapabilities = server.server.getClientCapabilities() || {};
-  const clientSupportsRoots: boolean = clientCapabilities.roots !== undefined;
+  const clientSupportsRoots: boolean = clientCapabilities?.roots !== undefined;
 
   // Fetch the roots list for this client
   if (clientSupportsRoots) {
@@ -48,7 +48,7 @@ export const syncRoots = async (server: McpServer, sessionId?: string) => {
             {
               level: "info",
               logger: "everything-server",
-              data: `Roots updated: ${response.roots.length} root(s) received from client`,
+              data: `Roots updated: ${response?.roots?.length} root(s) received from client`,
             },
             sessionId
           );

src/filesystem/package.json

@@ -26,7 +26,7 @@
   },
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.25.2",
-    "diff": "^5.1.0",
+    "diff": "^8.0.3",
     "glob": "^10.5.0",
     "minimatch": "^10.0.1",
     "zod-to-json-schema": "^3.23.5"

src/memory/__tests__/knowledge-graph.test.ts

@@ -390,5 +390,94 @@ describe('KnowledgeGraphManager', () => {
       expect(JSON.parse(lines[0])).toHaveProperty('type', 'entity');
       expect(JSON.parse(lines[1])).toHaveProperty('type', 'relation');
     });
+
+    it('should strip type field from entities when loading from file', async () => {
+      // Create entities and relations (these get saved with type field)
+      await manager.createEntities([
+        { name: 'Alice', entityType: 'person', observations: ['test observation'] },
+        { name: 'Bob', entityType: 'person', observations: [] },
+      ]);
+      await manager.createRelations([
+        { from: 'Alice', to: 'Bob', relationType: 'knows' },
+      ]);
+
+      // Verify file contains type field (order may vary)
+      const fileContent = await fs.readFile(testFilePath, 'utf-8');
+      const fileLines = fileContent.split('\n').filter(line => line.trim());
+      const fileItems = fileLines.map(line => JSON.parse(line));
+      const fileEntity = fileItems.find(item => item.type === 'entity');
+      const fileRelation = fileItems.find(item => item.type === 'relation');
+      expect(fileEntity).toBeDefined();
+      expect(fileEntity).toHaveProperty('type', 'entity');
+      expect(fileRelation).toBeDefined();
+      expect(fileRelation).toHaveProperty('type', 'relation');
+
+      // Create new manager instance to force reload from file
+      const manager2 = new KnowledgeGraphManager(testFilePath);
+      const graph = await manager2.readGraph();
+
+      // Verify loaded entities don't have type field
+      expect(graph.entities).toHaveLength(2);
+      graph.entities.forEach(entity => {
+        expect(entity).not.toHaveProperty('type');
+        expect(entity).toHaveProperty('name');
+        expect(entity).toHaveProperty('entityType');
+        expect(entity).toHaveProperty('observations');
+      });
+
+      // Verify loaded relations don't have type field
+      expect(graph.relations).toHaveLength(1);
+      graph.relations.forEach(relation => {
+        expect(relation).not.toHaveProperty('type');
+        expect(relation).toHaveProperty('from');
+        expect(relation).toHaveProperty('to');
+        expect(relation).toHaveProperty('relationType');
+      });
+    });
+
+    it('should strip type field from searchNodes results', async () => {
+      await manager.createEntities([
+        { name: 'Alice', entityType: 'person', observations: ['works at Acme'] },
+      ]);
+      await manager.createRelations([
+        { from: 'Alice', to: 'Alice', relationType: 'self' },
+      ]);
+
+      // Create new manager instance to force reload from file
+      const manager2 = new KnowledgeGraphManager(testFilePath);
+      const result = await manager2.searchNodes('Alice');
+
+      // Verify search results don't have type field
+      expect(result.entities).toHaveLength(1);
+      expect(result.entities[0]).not.toHaveProperty('type');
+      expect(result.entities[0].name).toBe('Alice');
+
+      expect(result.relations).toHaveLength(1);
+      expect(result.relations[0]).not.toHaveProperty('type');
+      expect(result.relations[0].from).toBe('Alice');
+    });
+
+    it('should strip type field from openNodes results', async () => {
+      await manager.createEntities([
+        { name: 'Alice', entityType: 'person', observations: [] },
+        { name: 'Bob', entityType: 'person', observations: [] },
+      ]);
+      await manager.createRelations([
+        { from: 'Alice', to: 'Bob', relationType: 'knows' },
+      ]);
+
+      // Create new manager instance to force reload from file
+      const manager2 = new KnowledgeGraphManager(testFilePath);
+      const result = await manager2.openNodes(['Alice', 'Bob']);
+
+      // Verify open results don't have type field
+      expect(result.entities).toHaveLength(2);
+      result.entities.forEach(entity => {
+        expect(entity).not.toHaveProperty('type');
+      });
+
+      expect(result.relations).toHaveLength(1);
+      expect(result.relations[0]).not.toHaveProperty('type');
+    });
   });
 });

src/memory/index.ts

@@ -74,8 +74,20 @@ export class KnowledgeGraphManager {
       const lines = data.split("\n").filter(line => line.trim() !== "");
       return lines.reduce((graph: KnowledgeGraph, line) => {
         const item = JSON.parse(line);
-        if (item.type === "entity") graph.entities.push(item as Entity);
+        if (item.type === "entity") {
-        if (item.type === "relation") graph.relations.push(item as Relation);
+          graph.entities.push({
+            name: item.name,
+            entityType: item.entityType,
+            observations: item.observations
+          });
+        }
+        if (item.type === "relation") {
+          graph.relations.push({
+            from: item.from,
+            to: item.to,
+            relationType: item.relationType
+          });
+        }
         return graph;
       }, { entities: [], relations: [] });
     } catch (error) {

src/time/pyproject.toml

@@ -17,10 +17,10 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
 ]
 dependencies = [
-    "mcp>=1.0.0",
+    "mcp>=1.23.0",
     "pydantic>=2.0.0",
     "tzdata>=2024.2",
-    "tzlocal>=5.3.1"
+    "tzlocal>=5.3.1",
 ]
 
 [project.scripts]

src/time/src/mcp_server_time/server.py

@@ -8,7 +8,7 @@ from tzlocal import get_localzone_name  # ← returns "Europe/Paris", etc.
 
 from mcp.server import Server
 from mcp.server.stdio import stdio_server
-from mcp.types import Tool, TextContent, ImageContent, EmbeddedResource
+from mcp.types import Tool, TextContent, ImageContent, EmbeddedResource, ErrorData, INVALID_PARAMS
 from mcp.shared.exceptions import McpError
 
 from pydantic import BaseModel
@@ -54,7 +54,7 @@ def get_zoneinfo(timezone_name: str) -> ZoneInfo:
     try:
         return ZoneInfo(timezone_name)
     except Exception as e:
-        raise McpError(f"Invalid timezone: {str(e)}")
+        raise McpError(ErrorData(code=INVALID_PARAMS, message=f"Invalid timezone: {str(e)}"))
 
 
 class TimeServer: