[WIP] Refactor everything server to be more modular and use recommended APIs.

Adding the get-resource-reference and get-resource-reference tools

* Updated architecture.md

* Added get-resource-links.ts
  - Registers the 'get-resource-reference' tool with the provided McpServer instance.
  - The registered tool retrieves a specified number of resource links and their metadata.

* In get-resource-reference.ts
  - fixed tool description

* In tools/index.ts
  - import registerGetResourceLinksTool
  - in registerTool
    - call registerGetResourceLinksTool

src/everything/tools/index.ts

@@ -3,6 +3,7 @@ import { registerAddTool } from "./add.js";
 import { registerAnnotatedMessageTool } from "./annotated-message.js";
 import { registerEchoTool } from "./echo.js";
 import { registerGetTinyImageTool } from "./get-tiny-image.js";
+import { registerGetResourceLinksTool } from "./get-resource-links.js";
 import { registerGetResourceReferenceTool } from "./get-resource-reference.js";
 import { registerLongRunningOperationTool } from "./long-running-operation.js";
 import { registerPrintEnvTool } from "./print-env.js";
@@ -19,6 +20,7 @@ export const registerTools = (server: McpServer) => {
   registerAnnotatedMessageTool(server);
   registerEchoTool(server);
   registerGetTinyImageTool(server);
+  registerGetResourceLinksTool(server);
   registerGetResourceReferenceTool(server);
   registerLongRunningOperationTool(server);
   registerPrintEnvTool(server);